The SerialEM Script Repository

Scripts by Category

Calibrations

• Find Tilt Axis Offset (Guenter Resch)
• Titan IlluminatedAreaLimits (Guenter Resch)

High-Level Functions

• Center Beam (Juha Huiskonen)
• MapGrids (Wim Hagen)
• Refine Eucentricity with Threshold (Guenter Resch)
• Center Detail (Juha Huiskonen)
• Focus Pair (Juha Huiskonen)
• Restore Microscope State (Guenter Resch)
• Wait For Drift (Juha Huiskonen)
• Save Microscope State (Guenter Resch)

Tomography

• Dose-symmetric tomography (Wim Hagen)
• Grouped dose-symmetric tomography (Wim Hagen)

Single Particle

• Tilt Pair (Juha Huiskonen)
• Auto Acquire on Holey Carbon (Juha Huiskonen)
• SPA multiple images Test Radius (Wim Hagen)
• test hole centering (Wim Hagen)
• LD (Henning Stahlberg)
• Manual Acquisition (Juha Huiskonen)
• SPA multiple images (Wim Hagen)
• Parameters (Henning Stahlberg)

Other Data Acquisition

• Prepare gridsquare (set eucentric height) (Jason de la Cruz)
• Continuous image acquisition (Jason de la Cruz)
• Check grid (Jason de la Cruz)
• Random Grid Sampler (Guenter Resch)

Function Libraries

• CINACronJob (Henning Stahlberg)
• WaitForRefilling (Chen Xu)
• CINAAutoFocus (Henning Stahlberg)

Testing

• Set intensity value (condenser lens) (Jason de la Cruz)
• K2 alignment timing test (David Mastronarde)
• Probe intensity value (condenser lens) (Jason de la Cruz)
• Beam Intensity Calibration Test (Guenter Resch)