CINACronJob

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Name	CINACronJob
Permalink	https://serialemscripts.nexperion.net/script/18
Category	Function Libraries
Language	SerialEM Scripting
Description	macro to perform maintenance tasks that are needed every few hours only
Author	Henning Stahlberg
Website link	http://c-cina.org

Version History

Version 1.0 (February 24, 2017; 525 download(s); SerialEM version ≥ 3.7)

Version 1.0

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Upload date	February 24, 2017
Download count	525
SerialEM version ≥	3.7

###################################################################
# macro to perform maintenance tasks that are needed every few hours only.
###################################################################
#
# Daniel Caujolle-Bert, Henning Stahlberg, C-CINA, Biozentrum, University of Basel
# Feb. 25, 2017
#
MacroName CINACronJob

# Check if a number of variables are defined
# Check, if CRONJOBMASTER is defined
IsVariableDefined CRONJOBMASTER
If $reportedValue1 == 0
   # Save Logfile, Close, Open new Logfile
   SaveLogOpenNew LOGFILE.log
   CRONJOBMASTER := 150
   FOCUSCOUNTER := 0
   DISPLAYCOUNTER := $DisplayOnly
   LASTX := 10000
   LASTY := 10000
   LASTZ := 10000
   focus_problem_counter := 0
Endif

echo "Cron job in $CRONJOBMASTER shots"

# Every few hours only:
if $CRONJOBMASTER > 0
   CRONJOBMASTER := $CRONJOBMASTER - 1
   DISPLAYCOUNTER := $DISPLAYCOUNTER - 1
   echo Displaying in $DISPLAYCOUNTER images.
   if $DISPLAYCOUNTER < 1
      DISPLAYCOUNTER := $DisplayOnly
      DisplayReturn := $noReturn
    else
      DisplayReturn := 0
   endif
   return
 else   
   CRONJOBMASTER := 150
endif

DoRefine = 0

# Get Refrigerant Levels
RefrigerantLevel 1
ALLEVEL = $repVal1
if $ALLEVEL > 30
   DoRefine = 1
endif

RefrigerantLevel 2
CLLEVEL = $repVal1
if $CLLEVEL > 40
   DoRefine = 1
endif

if $DoRefine == 1     
   # Refine ZLP   
   GoToLowDoseArea V
   Delay 2
   GoToLowDoseArea F
   Delay 2
   GoToLowDoseArea R
   Delay 2
   L 
   ReportMeanCounts 
   if $repVal1 > 30
      # Save Logfile, Close, Open new Logfile
      # SaveLogOpenNew LOGFILE.log
      RefineZLP 10
    else
      CRONJOBMASTER := 0
   endif
 else
   CRONJOBMASTER := 0
endif

# Update Dark Reference
LongOperation DA -1

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License

This code can be shared and adapted under the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) License (https://creativecommons.org/licenses/by-nc-sa/4.0/)