The SerialEM Script Repository

Scripts by Author

Chen Xu

• WaitForRefilling

Christian Dienemann

• Map grids (advanced)

David Mastronarde

• K2 alignment timing test

Fabian Eisenstein

• Fast-Incremental Single-Exposure tomography
• Parallel cryo electron tomography (PACE-tomo)
• Pre-calibrations for FISE tomography
• PACE-tomo target selection

Francisco Javier Chichón

• Acquire image SPIRAL

Georges Chreifi

• Jensen lab FISE Calibrations
• Jensen lab FISE
• Measure Eucentric Height Alternative

Guenter Resch

• Python Test
• Random Grid Sampler
• SerialEM Snapshot
• Refine Eucentricity with Threshold
• Save Microscope State
• Restore Microscope State
• Find Tilt Axis Offset
• Titan IlluminatedAreaLimits
• Beam Intensity Calibration Test

Henning Stahlberg

• Parameters
• LD
• CINACronJob
• CINAAutoFocus

Jan Rheinberger

• Zero Loss Settings
• Measure Sample Thickness (ALS)
• Intensity Zero
• Measure Sample Thickness (LM)
• Measure Sample Thickness
• Set Target for Sample Thickness

Jason de la Cruz

• Probe intensity value (condenser lens)
• Set intensity value (condenser lens)
• Continuous image acquisition
• Prepare gridsquare (set eucentric height)
• CRmov
• Check grid

Juha Huiskonen

• Manual Acquisition
• Center Detail
• Tilt Pair
• Center Beam
• Wait For Drift
• Focus Pair
• Auto Acquire on Holey Carbon

Marcus Fislage

• SPA data collection on JEOL CryoARM300
• Parameters Script JEOL CryoARM
• Functions for JEOL CryoARM300
• Test shots JEOL CryoARM300 (semi-automated)
• Hole Pattern Directions CryoARM300
• Make Grid Alas JEOL CryoARM300
• CLcomp_shift_angle_alignment JEOL CryoARM300
• BeamTilt vs IS CryoARM300
• BTandSTIGvsISmeasure CryoARM300

Martin Schorb

• Quick Tomography
• Serial Section Maps
• Find Tilt Range

Wim Hagen

• Dose-symmetric tomography
• MapGrids
• SPAK2aligntomap
• TuneScope
• test hole centering
• SPA multiple images Test Radius
• Grouped dose-symmetric tomography
• SPA multiple images
• k3blackstripecheck
• k2blackstripecheck