The SerialEM Script Repository

Scripts by Author

Chen Xu

• WaitForRefilling

David Mastronarde

• K2 alignment timing test

Fabian Eisenstein

• Fast-Incremental Single-Exposure tomography
• Parallel cryo electron tomography (PACE-tomo)
• Pre-calibrations for FISE tomography
• PACE-tomo target selection

Georges Chreifi

• Jensen lab FISE
• Measure Eucentric Height Alternative
• Jensen lab FISE Calibrations

Guenter Resch

• Titan IlluminatedAreaLimits
• Beam Intensity Calibration Test
• Python Test
• SerialEM Snapshot
• Random Grid Sampler
• Refine Eucentricity with Threshold
• Save Microscope State
• Restore Microscope State
• Find Tilt Axis Offset

Henning Stahlberg

• CINAAutoFocus
• Parameters
• LD
• CINACronJob

Jan Rheinberger

• Measure Sample Thickness
• Set Target for Sample Thickness
• Zero Loss Settings
• Measure Sample Thickness (ALS)
• Intensity Zero
• Measure Sample Thickness (LM)

Jason de la Cruz

• CRmov
• Prepare gridsquare (set eucentric height)
• Check grid
• Probe intensity value (condenser lens)
• Set intensity value (condenser lens)
• Continuous image acquisition

Juha Huiskonen

• Focus Pair
• Auto Acquire on Holey Carbon
• Manual Acquisition
• Center Detail
• Tilt Pair
• Center Beam
• Wait For Drift

Marcus Fislage

• BeamTilt vs IS CryoARM300
• BTandSTIGvsISmeasure CryoARM300
• SPA data collection on JEOL CryoARM300
• Parameters Script JEOL CryoARM
• Functions for JEOL CryoARM300
• Test shots JEOL CryoARM300 (semi-automated)
• Hole Pattern Directions CryoARM300
• Make Grid Alas JEOL CryoARM300
• CLcomp_shift_angle_alignment JEOL CryoARM300

Martin Schorb

• Find Tilt Range
• Quick Tomography
• Serial Section Maps

Wim Hagen

• SPAK2aligntomap
• Dose-symmetric tomography
• MapGrids
• TuneScope
• test hole centering
• Grouped dose-symmetric tomography
• SPA multiple images Test Radius
• k3blackstripecheck
• SPA multiple images
• k2blackstripecheck