The SerialEM Script Repository


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Name SPAK2aligntomap
Category Single Particle
Language SerialEM Scripting
Description Acquire grid map. Acquire grid square maps. Select acquisition areas by adding Navigator points in the grid square maps. Setup SerialEM Low-Dose, acquire a Low-Dose View image, save it as a map. Run py-EM script on the saved Navigator file (requires IMOD). Load the new Navigator file generated by Start automated acquisition script.
Author Wim Hagen
Literature reference

Version History

Version 0.1


Upload date December 30, 2018
Download count 488
SerialEM version ≥ 3.7



This code can be shared and adapted under the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International (CC BY-NC-SA 4.0) License (